In DS9 they were themed after rivers, TOS I believe they named after scientists. While aux craft wont be a primary use in game what type of names would you use or theme.
I think the admiral or station facilities manager that was equipping my starship out before leaving the yards. they would have had a afinity for 80's rock bands. So possibly..............
Rolling Stone type shuttle pod
Quet Riot type shuttle pod
Queen type captains yacht ( due to possible defiant class size delta flyer refit, or shuttle for nemesis)